VASP 5.3.3 compilation error

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pro_junjie

VASP 5.3.3 compilation error

#1 Post by pro_junjie » Fri Dec 28, 2012 12:10 pm

Dear All,

I met a problem as following when I tried to install the VASP 5.3.3.
Any comments will be welcomed.

dynconstr.F(14): error #7002: Error in opening the compiled module file. Check INCLUDE paths. [NPT_DYNAMICS]
USE npt_dynamics
------------^
dynconstr.F(116): remark #8290: Recommended relationship between field width 'W' and the number of fractional digits 'D' in this edit descriptor is 'W>=D+3'.
write(IO%IU6,FMT='(3X,A22,X,F10.8)') ' ANDERSEN_PROB = ',ANDERSEN_PROB
-----------------------------------------------^
dynconstr.F(139): remark #8290: Recommended relationship between field width 'W' and the number of fractional digits 'D' in this edit descriptor is 'W>=D+3'.
write(g_io%REPORT,FMT='(3X,A22,X,F10.8)') ' ANDERSEN_PROB = ',ANDERSEN_PROB
----------------------------------------------------^
dynconstr.F(2477): remark #8290: Recommended relationship between field width 'W' and the number of fractional digits 'D' in this edit descriptor is 'W>=D+3'.
write(IO%IU6,FMT='(3X,A22,X,F10.8)') ' HILLS_H = ', high
-----------------------------------------^
dynconstr.F(2478): remark #8290: Recommended relationship between field width 'W' and the number of fractional digits 'D' in this edit descriptor is 'W>=D+3'.
write(IO%IU6,FMT='(3X,A22,X,F10.8)') ' HILLS_W = ' , width
-----------------------------------------^
dynconstr.F(2480): remark #8290: Recommended relationship between field width 'W' and the number of fractional digits 'D' in this edit descriptor is 'W>=D+3'.
write(IO%IU6,FMT='(3X,A22,X,F10.8)') ' HILLS_STRIDE = ', hills%stride
-----------------------------------------^
dynconstr.F(2485): remark #8290: Recommended relationship between field width 'W' and the number of fractional digits 'D' in this edit descriptor is 'W>=D+3'.
write(g_io%REPORT,FMT='(3X,A22,X,F10.8)') ' HILLS_H = ', high
----------------------------------------------^
dynconstr.F(2486): remark #8290: Recommended relationship between field width 'W' and the number of fractional digits 'D' in this edit descriptor is 'W>=D+3'.
write(g_io%REPORT,FMT='(3X,A22,X,F10.8)') ' HILLS_W = ' , width
----------------------------------------------^
dynconstr.F(2488): remark #8290: Recommended relationship between field width 'W' and the number of fractional digits 'D' in this edit descriptor is 'W>=D+3'.
write(g_io%REPORT,FMT='(3X,A22,X,F10.8)') ' HILLS_STRIDE = ', hills%stride
----------------------------------------------^
dynconstr.F(2495): remark #8290: Recommended relationship between field width 'W' and the number of fractional digits 'D' in this edit descriptor is 'W>=D+3'.
write(IO%IU6,FMT='(3X,A22,X,F10.8)') 'HILLS_ANDERSEN_PROB = ', hills%andersen_prob
-------------------------------------------^
dynconstr.F(2525): remark #8290: Recommended relationship between field width 'W' and the number of fractional digits 'D' in this edit descriptor is 'W>=D+3'.
write(g_io%REPORT,FMT='(3X,A22,X,F10.8)') 'HILLS_ANDERSEN_PROB = ', hills%andersen_prob
------------------------------------------------^
compilation aborted for dynconstr.f90 (code 1)
make: *** [dynconstr.o] Error 1
Last edited by pro_junjie on Fri Dec 28, 2012 12:10 pm, edited 1 time in total.

pro_junjie

VASP 5.3.3 compilation error

#2 Post by pro_junjie » Sun Dec 30, 2012 10:30 am

I solved this problem, now I met another error:


fcidump.f90:(.text+0x4b12): undefined reference to νmrocfcidump.f90:(.0x4d56):undefedreferencepzgemr2d_'
fcidump.f90:(.text+0x4f75): undefined reference to pzmr2dfcidump.o:Infunctionfcidump_mp_calc_ftod_':
fcidump.f90:(.text+0xa77a): undefined reference to blacsπnfofcidump.f90:(.0xa936):undefedreferenceblacs_pinfo_'
fcidump.f90:(.text+0xa94a): undefined reference to blacstfcidump.f90:(.0xa96b):undefedreferenceblacs_gridinit_'
fcidump.f90:(.text+0xa98c): undefined reference to blacsgridfofcidump.f90:(.0xa9ad):undefedreferenceblacs_gridinfo_'
fcidump.f90:(.text+0xaa07): undefined reference to νmrocfcidump.f90:(.0xaa40):undefedreferencenumroc_'
fcidump.f90:(.text+0xb1b1): undefined reference to νmrocfcidump.f90:(.0xb1ea):undefedreferencenumroc_'
fcidump.f90:(.text+0xb935): undefined reference to blacsgridfofcidump.f90:(.0xc81c):undefedreferenceblacs_gridinfo_'
fcidump.f90:(.text+0xef35): undefined reference to blacsgridfofcidump.f90:(.0xef78):undefedreferencenumroc_'
fcidump.f90:(.text+0xf1c0): undefined reference to pzmr2dfcidump.f90:(.0xf3da):undefedreferencepzgemr2d_'
fcidump.o: In function fcidumpmpcalcfcidump:fcidump.f90:(.0x11428):undefedreferenceblacs_pinfo_'
fcidump.f90:(.text+0x11b06): undefined reference to blacsπnfofcidump.f90:(.0x11b2d):undefedreferenceblacs_pinfo_'
fcidump.f90:(.text+0x11b41): undefined reference to blacstfcidump.f90:(.0x11b62):undefedreferenceblacs_gridinit_'
fcidump.f90:(.text+0x11b83): undefined reference to blacsgridfofcidump.f90:(.0x12cf4):undefedreferenceblacs_gridexit_'
fcidump.f90:(.text+0x12d00): undefined reference to blacsgrideξtump2no:Infunctionump2no_mp_calculate_fno_':
ump2no.f90:(.text+0x332): undefined reference to blacsπnfoump2nf90:(.0x359):undefedreferenceblacs_pinfo_'
ump2no.f90:(.text+0x36d): undefined reference to blacstump2nf90:(.0x38e):undefedreferenceblacs_gridinit_'
ump2no.f90:(.text+0x3af): undefined reference to blacsgridfoump2nf90:(.0xbca):undefedreferenceblacs_gridexit_'
ump2no.f90:(.text+0xbd6): undefined reference to blacsgrideξtump2nf90:(.0xc52):undefedreferenceblacs_gridinfo_'
ump2no.f90:(.text+0x1e1b): undefined reference to pzmmump2nf90:(.0x200b):undefedreferencepzgemm_'
ump2no.f90:(.text+0x21a6): undefined reference to pztraνump2nf90:(.0x238e):undefedreferencepzgemm_'
ump2no.f90:(.text+0x257a): undefined reference to pzmmump2nf90:(.0x27d3):undefedreferencepzgemm_'
ump2no.f90:(.text+0x2b2f): undefined reference to blacsgridfoump2nf90:(.0x2b50):undefedreferencenumroc_'
ump2no.f90:(.text+0x2b77): undefined reference to νmrocump2nf90:(.0x3350):undefedreferencepzgemm_'
ump2no.f90:(.text+0x355f): undefined reference to pzmmump2nf90:(.0x382a):undefedreferencepzgemm_'
ump2no.f90:(.text+0x3e60): undefined reference to pzheevump2nf90:(.0x4355):undefedreferencepzheev_'
ump2no.f90:(.text+0x49da): undefined reference to pztraνump2nf90:(.0x4f26):undefedreferencepzgemm_'
ump2no.f90:(.text+0x519d): undefined reference to pztraνump2nf90:(.0x59d6):undefedreferenceblacs_gridinfo_'
ump2no.f90:(.text+0x5a71): undefined reference to νmrocump2nf90:(.0x5aac):undefedreferencenumroc_'
ump2no.f90:(.text+0x5ae7): undefined reference to νmrocump2nf90:(.0x5b0f):undefedreferencenumroc_'
ump2no.f90:(.text+0x61d6): undefined reference to pzmr2dump2nf90:(.0x6231):undefedreferenceblacs_gridinfo_'
ump2no.f90:(.text+0x6252): undefined reference to νmrocump2nf90:(.0x6273):undefedreferencenumroc_'
ump2no.f90:(.text+0x6294): undefined reference to νmrocump2nf90:(.0x62b5):undefedreferencenumroc_'
ump2no.f90:(.text+0x64cc): undefined reference to pztraνump2nf90:(.0x661c):undefedreferencepzgemm_'
ump2no.f90:(.text+0x66db): undefined reference to pztraνump2nf90:(.0x6700):undefedreferenceblacs_gridinfo_'
ump2no.f90:(.text+0x68ee): undefined reference to pzmr2dump2nf90:(.0x6913):undefedreferenceblacs_gridinfo_'
ump2no.f90:(.text+0x6a85): undefined reference to pzmmump2nf90:(.0x6b43):undefedreferencepztranu_'
ump2no.f90:(.text+0x6ca1): undefined reference to pzmmump2nf90:(.0x7021):undefedreferenceblacs_gridinfo_'
ump2no.f90:(.text+0x74b8): undefined reference to pzmr2dump2nf90:(.0x76b2):undefedreferencepzgemr2d_'
ump2no.o: In function ump2nompapplydenom:ump2nf90:(.0x7bad):undefedreferenceblacs_gridinfo_'
ump2no.f90:(.text+0x7bce): undefined reference to νmrocump2nf90:(.0x7bf5):undefedreferencenumroc_'
ump2no.o: In function ump2nompcalc2orbitalfd:ump2nf90:(.0x93a0):undefedreferenceblacs_pinfo_'
ump2no.f90:(.text+0x955c): undefined reference to blacsπnfoump2nf90:(.0x9570):undefedreferenceblacs_get_'
ump2no.f90:(.text+0x9591): undefined reference to blacsgriditump2nf90:(.0x95b2):undefedreferenceblacs_gridinfo_'
ump2no.f90:(.text+0x95d3): undefined reference to blacsgridfoump2nf90:(.0x962d):undefedreferencenumroc_'
ump2no.f90:(.text+0x9666): undefined reference to νmrocump2nf90:(.0x9de7):undefedreferencenumroc_'
ump2no.f90:(.text+0x9e20): undefined reference to νmrocump2nf90:(.0xa565):undefedreferenceblacs_gridinfo_'
ump2no.f90:(.text+0xe3b4): undefined reference to blacsgridfoump2nf90:(.0xe3f9):undefedreferencenumroc_'
ump2no.f90:(.text+0xe635): undefined reference to pzmr2dump2nf90:(.0xe836):undefedreferencepzgemr2d_'
ump2no.o: In function ump2nompsetuptwoe4orbital:ump2nf90:(.0xf45e):undefedreferenceblacs_gridinfo_'
ump2no.f90:(.text+0xf4c6): undefined reference to νmrocump2nf90:(.0xf4f8):undefedreferencenumroc_'
ump2no.o: In function ump2nompredistributefdgrid:ump2nf90:(.0xfd4d):undefedreferenceblacs_gridinfo_'
ump2no.f90:(.text+0xfd92): undefined reference to νmrocump2nf90:(.0xffe0):undefedreferencepzgemr2d_'
ump2no.f90:(.text+0x101f6): undefined reference to pzmr2dump2no:Infunctionump2no_mp_setup_redistribute_w_cw_grid_':
ump2no.f90:(.text+0x1027b): undefined reference to blacsgridfoump2nf90:(.0x1030d):undefedreferencenumroc_'
ump2no.f90:(.text+0x10340): undefined reference to νmrocump2nf90:(.0x10374):undefedreferencenumroc_'
ump2no.f90:(.text+0x10396): undefined reference to νmrocump2nf90:(.0x10920):undefedreferencepzgemr2d_'
ump2no.o: In function ump2nompbackdistributeno2_wcw:ump2nf90:(.0x10bc7):undefedreferenceblacs_gridinfo_'
ump2no.f90:(.text+0x10d9d): undefined reference to pzmr2dump2no:Infunctionump2no_mp_setup_ftod_':
ump2no.f90:(.text+0x10e31): undefined reference to blacsgridfoump2nf90:(.0x10e82):undefedreferencenumroc_'
ump2no.f90:(.text+0x10eba): undefined reference to νmrocump2nf90:(.0x115d5):undefedreferencenumroc_'
ump2no.f90:(.text+0x1160e): undefined reference to νmrocump2no:Infunctionump2no_mp_fockm_out_':
ump2no.f90:(.text+0x11a5a): undefined reference to blacsgridfoump2nf90:(.0x11e5c):undefedreferencepzgemr2d_'
ump2no.f90:(.text+0x12005): undefined reference to pzmr2dump2no:Infunctionump2no_mp_init_blacs_grid_':
ump2no.f90:(.text+0x1210c): undefined reference to blacsπnfoump2nf90:(.0x1228b):undefedreferenceblacs_pinfo_'
ump2no.f90:(.text+0x1229f): undefined reference to blacstump2nf90:(.0x122c0):undefedreferenceblacs_gridinit_'
ump2no.f90:(.text+0x122e1): undefined reference to blacsgridfoump2no:Infunctionump2no_mp_init_blacs_cols_':
ump2no.f90:(.text+0x12311): undefined reference to blacsπnfoump2nf90:(.0x12338):undefedreferenceblacs_pinfo_'
ump2no.f90:(.text+0x1234c): undefined reference to blacstump2nf90:(.0x1236d):undefedreferenceblacs_gridinit_'
ump2no.f90:(.text+0x1238e): undefined reference to blacsgridfobse.o:Infunctionbse_mp_calculate_bse_':
bse.f90:(.text+0x3c42): undefined reference to blacsgridfobse.f90:(.0x3c68):undefedreferencenumroc_'
bse.f90:(.text+0x3c94): undefined reference to νmrocbse.f90:(.0x3dd5):undefedreferencepcgemm_'
bse.f90:(.text+0x3e84): undefined reference to pcmmbse.f90:(.0x4957):undefedreferenceblacs_gridinfo_'
bse.f90:(.text+0x497d): undefined reference to νmrocbse.f90:(.0x49a9):undefedreferencenumroc_'
bse.f90:(.text+0x4ae5): undefined reference to pcmmbse.f90:(.0x584f):undefedreferencepcgemm_'
bse.f90:(.text+0x58ff): undefined reference to pcmmbse.f90:(.0x5a84):undefedreferencepcgemm_'
bse.f90:(.text+0x85dc): undefined reference to blacsgridfobse.f90:(.0x8602):undefedreferencenumroc_'
bse.f90:(.text+0x862e): undefined reference to νmrocbse.o:Infunctionbse_mp_twoelectron4o_store_scala_':
bse.f90:(.text+0xaaa0): undefined reference to blacsgridfobse.f90:(.0xaac9):undefedreferencenumroc_'
bse.f90:(.text+0xaaf5): undefined reference to νmrocbse.o:Infunctionbse_mp_calculate_bse_oszi_scala_':
bse.f90:(.text+0xec05): undefined reference to blacsgridfobse.f90:(.0xec22):undefedreferencenumroc_'
bse.f90:(.text+0xec48): undefined reference to νmrocbse.o:Infunctionbse_mp_tda_bse_sca_':
bse.f90:(.text+0x164c5): undefined reference to blacsgridfobse.f90:(.0x164e7):undefedreferencenumroc_'
bse.f90:(.text+0x1650c): undefined reference to νmrocbse.f90:(.0x16640):undefedreferencepcgemm_'
bse.f90:(.text+0x166ea): undefined reference to pcmmbse.f90:(.0x16d0b):undefedreferencepcgemm_'
bse.f90:(.text+0x16db6): undefined reference to pcmmbse.o:Infunctionbse_mp_tda_bse_eigenvectors_sca_':
bse.f90:(.text+0x16fbf): undefined reference to blacsgridfobse.f90:(.0x16fe1):undefedreferencenumroc_'
bse.f90:(.text+0x17009): undefined reference to νmrocbse.f90:(.0x1713c):undefedreferencepcgemm_'
bse.f90:(.text+0x17ceb): undefined reference to pcmmbse.o:Infunctionbse_mp_tda_bse_eigenvectors_full_sca_':
bse.f90:(.text+0x180e9): undefined reference to blacsgridfobse.f90:(.0x1810b):undefedreferencenumroc_'
bse.f90:(.text+0x18133): undefined reference to νmrocbse.f90:(.0x182e4):undefedreferencepcgemm_'
bse.f90:(.text+0x19acd): undefined reference to pcmmbse.f90:(.0x19b8a):undefedreferencepcgemm_'
../vasp.5.lib/libdmy.a(diolib.o): In function nxtu:diolib.f:(.0x57):undefedreference_gfortran_st_inquire'
../vasp.5.lib/libdmy.a(diolib.o): In function rdpos:diolib.f:(.0xde):undefedreference_gfortran_st_inquire'
diolib.f:(.text+0x12a): undefined reference to _gfortranstopendiolib.f:(.0x161):undefedreference_gfortran_st_rewind'
diolib.f:(.text+0x22a): undefined reference to _gfortranstreaddiolib.f:(.0x23a):undefedreference_gfortran_transfer_character'
diolib.f:(.text+0x242): undefined reference to _gfortranstreaddodiolib.f:(.0x286):undefedreference_gfortran_string_index'
diolib.f:(.text+0x2bf): undefined reference to _gfortranstclosediolib.f:(.0x2f0):undefedreference_gfortran_st_close'
../vasp.5.lib/libdmy.a(diolib.o): In function rdle:diolib.f:(.0x3d7):undefedreference_gfortran_st_open'
diolib.f:(.text+0x434): undefined reference to _gfortranstreaddiolib.f:(.0x449):undefedreference_gfortran_transfer_character'
diolib.f:(.text+0x451): undefined reference to _gfortranstreaddodiolib.f:(.0x4aa):undefedreference_gfortran_st_read'
diolib.f:(.text+0x4b8): undefined reference to _gfortrantranercharacterdiolib.f:(.0x4c0):undefedreference_gfortran_st_read_done'
diolib.f:(.text+0x4f7): undefined reference to _gfortranstclose..vasp.5.liblibdmy.a(diolib.o):Infunctionerase_':
diolib.f:(.text+0x5c8): undefined reference to _gfortranstopendiolib.f:(.0x608):undefedreference_gfortran_st_close'
../vasp.5.lib/libdmy.a(diolib.o): In function append:diolib.f:(.0x6cd):undefedreference_gfortran_st_inquire'
diolib.f:(.text+0x71b): undefined reference to _gfortranstreaddiolib.f:(.0x72b):undefedreference_gfortran_transfer_character'
diolib.f:(.text+0x733): undefined reference to _gfortranstreaddodiolib.f:(.0x768):undefedreference_gfortran_st_backspace'
../vasp.5.lib/libdmy.a(diolib.o): In function can:diolib.f:(.0x7d3):undefedreference_gfortran_st_inquire'
diolib.f:(.text+0x846): undefined reference to _gfortranstquirediolib.f:(.0x897):undefedreference_gfortran_st_inquire'
diolib.f:(.text+0x909): undefined reference to _gfortranstquirediolib.f:(.0x958):undefedreference_gfortran_st_inquire'
diolib.f:(.text+0x981): undefined reference to _gfortrancomparestrgdiolib.f:(.0x9ba):undefedreference_gfortran_st_inquire'
diolib.f:(.text+0x9f3): undefined reference to _gfortranstclosediolib.f:(.0xa0f):undefedreference_gfortran_compare_string'
diolib.f:(.text+0xa72): undefined reference to _gfortranstopendiolib.f:(.0xacc):undefedreference_gfortran_st_open'
../vasp.5.lib/libdmy.a(diolib.o): In function reopen:diolib.f:(.0xb49):undefedreference_gfortran_st_inquire'
diolib.f:(.text+0xb9a): undefined reference to _gfortranstquirediolib.f:(.0xc0c):undefedreference_gfortran_st_inquire'
diolib.f:(.text+0xc5b): undefined reference to _gfortranstquirediolib.f:(.0xc84):undefedreference_gfortran_compare_string'
diolib.f:(.text+0xcbd): undefined reference to _gfortranstquirediolib.f:(.0xce5):undefedreference_gfortran_st_close'
diolib.f:(.text+0xd01): undefined reference to _gfortrancomparestrgdiolib.f:(.0xd64):undefedreference_gfortran_st_open'
diolib.f:(.text+0xdbe): undefined reference to _gfortranstopen..vasp.5.liblibdmy.a(diolib.o):Infunctionwforce_':
diolib.f:(.text+0xe3b): undefined reference to _gfortranstquirediolib.f:(.0xe8c):undefedreference_gfortran_st_inquire'
diolib.f:(.text+0xefe): undefined reference to _gfortranstquirediolib.f:(.0xf4d):undefedreference_gfortran_st_inquire'
diolib.f:(.text+0xf76): undefined reference to _gfortrancomparestrgdiolib.f:(.0xfaf):undefedreference_gfortran_st_inquire'
diolib.f:(.text+0xfd7): undefined reference to _gfortranstclosediolib.f:(.0xff3):undefedreference_gfortran_compare_string'
diolib.f:(.text+0x1056): undefined reference to _gfortranstopendiolib.f:(.0x10c1):undefedreference_gfortran_st_open'
../vasp.5.lib/libdmy.a(dlexlib.o): In function chkedq:dxlib.f:(.0x597):undefedreference_gfortran_string_index'
dlexlib.f:(.text+0x600): undefined reference to _gfortranstwritedxlib.f:(.0x612):undefedreference_gfortran_transfer_character'
dlexlib.f:(.text+0x627): undefined reference to _gfortrantranererdxlib.f:(.0x639):undefedreference_gfortran_transfer_character'
dlexlib.f:(.text+0x651): undefined reference to _gfortrantranererdxlib.f:(.0x659):undefedreference_gfortran_st_write_done'
../vasp.5.lib/libdmy.a(dlexlib.o): In function chkf<:dxlib.f:(.0x928):undefedreference_gfortran_st_write'
dlexlib.f:(.text+0x93a): undefined reference to _gfortrantranercharacterdxlib.f:(.0x94f):undefedreference_gfortran_transfer_integer'
dlexlib.f:(.text+0x961): undefined reference to _gfortrantranercharacterdxlib.f:(.0x987):undefedreference_gfortran_transfer_integer'
dlexlib.f:(.text+0x98f): undefined reference to _gfortranstwritedodxlib.f:(.0xa97):undefedreference_gfortran_st_write'
dlexlib.f:(.text+0xaab): undefined reference to _gfortrantranercharacterdxlib.f:(.0xac2):undefedreference_gfortran_transfer_integer'
dlexlib.f:(.text+0xad6): undefined reference to _gfortrantranercharacterdxlib.f:(.0xafd):undefedreference_gfortran_transfer_integer'
dlexlib.f:(.text+0xb07): undefined reference to _gfortran_st_write_done' dlexlib.f:(.text+0xbcf): undefined reference to _gfortran_st_write'
dlexlib.f:(.text+0xbe1): undefined reference to _gfortran_transfer_character' dlexlib.f:(.text+0xbf6): undefined reference to _gfortran_transfer_integer'
dlexlib.f:(.text+0xc08): undefined reference to _gfortran_transfer_character' dlexlib.f:(.text+0xc1a): undefined reference to _gfortran_transfer_integer'
dlexlib.f:(.text+0xc22): undefined reference to _gfortran_st_write_done' ../vasp.5.lib/libdmy.a(dlexlib.o): In function length_':
dlexlib.f:(.text+0xde3): undefined reference to _gfortran_compare_string' dlexlib.f:(.text+0xe0e): undefined reference to _gfortran_compare_string'
dlexlib.f:(.text+0xe36): undefined reference to _gfortran_compare_string' dlexlib.f:(.text+0xe5e): undefined reference to _gfortran_compare_string'
dlexlib.f:(.text+0xe89): undefined reference to _gfortran_compare_string' ../vasp.5.lib/libdmy.a(dlexlib.o):dlexlib.f:(.text+0xeb1): more undefined references to _gfortran_compare_string' follow
../vasp.5.lib/libdmy.a(dlexlib.o): In function chkint_': dlexlib.f:(.text+0x11e8): undefined reference to _gfortran_st_write'
dlexlib.f:(.text+0x11fa): undefined reference to _gfortran_transfer_character' dlexlib.f:(.text+0x120f): undefined reference to _gfortran_transfer_integer'
dlexlib.f:(.text+0x1217): undefined reference to _gfortran_st_write_done' dlexlib.f:(.text+0x1272): undefined reference to _gfortran_concat_string'
dlexlib.f:(.text+0x1298): undefined reference to _gfortran_concat_string' dlexlib.f:(.text+0x1332): undefined reference to _gfortran_st_read'
dlexlib.f:(.text+0x1347): undefined reference to _gfortran_transfer_real' dlexlib.f:(.text+0x134f): undefined reference to _gfortran_st_read_done'
dlexlib.f:(.text+0x13cd): undefined reference to _gfortran_compare_string' dlexlib.f:(.text+0x146d): undefined reference to _gfortran_st_write'
dlexlib.f:(.text+0x147f): undefined reference to _gfortran_transfer_character' dlexlib.f:(.text+0x14a5): undefined reference to _gfortran_transfer_integer'
dlexlib.f:(.text+0x14b7): undefined reference to _gfortran_transfer_character' dlexlib.f:(.text+0x14bf): undefined reference to _gfortran_st_write_done'
dlexlib.f:(.text+0x1846): undefined reference to _gfortran_st_read' dlexlib.f:(.text+0x185b): undefined reference to _gfortran_transfer_integer'
dlexlib.f:(.text+0x1863): undefined reference to _gfortran_st_read_done' dlexlib.f:(.text+0x18af): undefined reference to _gfortran_compare_string'
dlexlib.f:(.text+0x19b0): undefined reference to _gfortran_st_write' dlexlib.f:(.text+0x19c2): undefined reference to _gfortran_transfer_character'
dlexlib.f:(.text+0x19d7): undefined reference to _gfortran_transfer_integer' dlexlib.f:(.text+0x19e9): undefined reference to _gfortran_transfer_character'
dlexlib.f:(.text+0x1a01): undefined reference to _gfortran_transfer_integer' dlexlib.f:(.text+0x1a13): undefined reference to _gfortran_transfer_character'
dlexlib.f:(.text+0x1a1b): undefined reference to _gfortran_st_write_done' dlexlib.f:(.text+0x1aca): undefined reference to _gfortran_st_write'
dlexlib.f:(.text+0x1adc): undefined reference to _gfortran_transfer_character' dlexlib.f:(.text+0x1af1): undefined reference to _gfortran_transfer_integer'
dlexlib.f:(.text+0x1b03): undefined reference to _gfortran_transfer_character' dlexlib.f:(.text+0x1b0b): undefined reference to _gfortran_st_write_done'
dlexlib.f:(.text+0x1b33): undefined reference to _gfortran_concat_string' dlexlib.f:(.text+0x1b54): undefined reference to _gfortran_concat_string'
dlexlib.f:(.text+0x1be9): undefined reference to _gfortran_st_read' dlexlib.f:(.text+0x1bfe): undefined reference to _gfortran_transfer_real'
dlexlib.f:(.text+0x1c06): undefined reference to _gfortran_st_read_done' ../vasp.5.lib/libdmy.a(dlexlib.o): In function dattyp_':
dlexlib.f:(.text+0x1ed2): undefined reference to _gfortran_st_write' dlexlib.f:(.text+0x1ee4): undefined reference to _gfortran_transfer_character'
dlexlib.f:(.text+0x1f0f): undefined reference to _gfortran_transfer_integer' dlexlib.f:(.text+0x1f17): undefined reference to _gfortran_st_write_done'
../vasp.5.lib/libdmy.a(dlexlib.o): In function chktyp_': dlexlib.f:(.text+0x22a7): undefined reference to _gfortran_runtime_error'
dlexlib.f:(.text+0x22c7): undefined reference to _gfortran_os_error' dlexlib.f:(.text+0x2301): undefined reference to _gfortran_concat_string'
dlexlib.f:(.text+0x2327): undefined reference to _gfortran_runtime_error' dlexlib.f:(.text+0x2347): undefined reference to _gfortran_os_error'
dlexlib.f:(.text+0x237c): undefined reference to _gfortran_concat_string' dlexlib.f:(.text+0x23bd): undefined reference to _gfortran_runtime_error'
dlexlib.f:(.text+0x23dd): undefined reference to _gfortran_os_error' dlexlib.f:(.text+0x2413): undefined reference to _gfortran_concat_string'
dlexlib.f:(.text+0x244d): undefined reference to _gfortran_runtime_error' dlexlib.f:(.text+0x246d): undefined reference to _gfortran_os_error'
dlexlib.f:(.text+0x24a4): undefined reference to _gfortran_concat_string' dlexlib.f:(.text+0x2569): undefined reference to _gfortran_compare_string'
dlexlib.f:(.text+0x2584): undefined reference to _gfortran_compare_string' dlexlib.f:(.text+0x260a): undefined reference to _gfortran_st_write'
dlexlib.f:(.text+0x261c): undefined reference to _gfortran_transfer_character' dlexlib.f:(.text+0x2631): undefined reference to _gfortran_transfer_integer'
dlexlib.f:(.text+0x2639): undefined reference to _gfortran_st_write_done' dlexlib.f:(.text+0x2c74): undefined reference to _gfortran_st_write'
dlexlib.f:(.text+0x2c86): undefined reference to _gfortran_transfer_character' dlexlib.f:(.text+0x2c9b): undefined reference to _gfortran_transfer_integer'
dlexlib.f:(.text+0x2ca3): undefined reference to _gfortran_st_write_done' ../vasp.5.lib/libdmy.a(dlexlib.o): In function replac_':
dlexlib.f:(.text+0x2f8d): undefined reference to _gfortran_runtime_error' dlexlib.f:(.text+0x2fae): undefined reference to _gfortran_os_error'
dlexlib.f:(.text+0x2fcd): undefined reference to _gfortran_concat_string' dlexlib.f:(.text+0x2ffd): undefined reference to _gfortran_runtime_error'
dlexlib.f:(.text+0x301d): undefined reference to _gfortran_os_error' dlexlib.f:(.text+0x305a): undefined reference to _gfortran_concat_string'
dlexlib.f:(.text+0x311e): undefined reference to _gfortran_runtime_error' dlexlib.f:(.text+0x313e): undefined reference to _gfortran_os_error'
dlexlib.f:(.text+0x316f): undefined reference to _gfortran_concat_string' dlexlib.f:(.text+0x3223): undefined reference to _gfortran_runtime_error'
dlexlib.f:(.text+0x3244): undefined reference to _gfortran_os_error' dlexlib.f:(.text+0x3263): undefined reference to _gfortran_concat_string'
dlexlib.f:(.text+0x333e): undefined reference to _gfortran_st_open' dlexlib.f:(.text+0x33a7): undefined reference to _gfortran_st_write'
dlexlib.f:(.text+0x33c6): undefined reference to _gfortran_transfer_character' dlexlib.f:(.text+0x33e7): undefined reference to _gfortran_transfer_character'
dlexlib.f:(.text+0x3415): undefined reference to _gfortran_transfer_character' dlexlib.f:(.text+0x3422): undefined reference to _gfortran_st_write_done'
dlexlib.f:(.text+0x347e): undefined reference to _gfortran_st_write' dlexlib.f:(.text+0x349f): undefined reference to _gfortran_transfer_character'
dlexlib.f:(.text+0x34c7): undefined reference to _gfortran_transfer_character' dlexlib.f:(.text+0x34d4): undefined reference to _gfortran_st_write_done'
dlexlib.f:(.text+0x3537): undefined reference to _gfortran_st_write' dlexlib.f:(.text+0x3556): undefined reference to _gfortran_transfer_character'
dlexlib.f:(.text+0x3577): undefined reference to _gfortran_transfer_character' dlexlib.f:(.text+0x3584): undefined reference to _gfortran_st_write_done'
dlexlib.f:(.text+0x35bb): undefined reference to _gfortran_st_rewind' dlexlib.f:(.text+0x3609): undefined reference to _gfortran_st_read'
dlexlib.f:(.text+0x361e): undefined reference to _gfortran_transfer_character' dlexlib.f:(.text+0x362b): undefined reference to _gfortran_st_read_done'
dlexlib.f:(.text+0x3662): undefined reference to _gfortran_st_close' dlexlib.f:(.text+0x36cc): undefined reference to _gfortran_st_write'
dlexlib.f:(.text+0x36e3): undefined reference to _gfortran_transfer_character' dlexlib.f:(.text+0x36f0): undefined reference to _gfortran_st_write_done'
dlexlib.f:(.text+0x3741): undefined reference to _gfortran_st_write' dlexlib.f:(.text+0x3758): undefined reference to _gfortran_transfer_character'
dlexlib.f:(.text+0x3765): undefined reference to _gfortran_st_write_done' dlexlib.f:(.text+0x37b6): undefined reference to _gfortran_st_write'
dlexlib.f:(.text+0x37cd): undefined reference to _gfortran_transfer_character' dlexlib.f:(.text+0x37da): undefined reference to _gfortran_st_write_done'
dlexlib.f:(.text+0x382b): undefined reference to _gfortran_st_write' dlexlib.f:(.text+0x3842): undefined reference to _gfortran_transfer_character'
dlexlib.f:(.text+0x3857): undefined reference to _gfortran_transfer_integer' dlexlib.f:(.text+0x386e): undefined reference to _gfortran_transfer_character'
dlexlib.f:(.text+0x3888): undefined reference to _gfortran_transfer_integer' dlexlib.f:(.text+0x389f): undefined reference to _gfortran_transfer_character'
dlexlib.f:(.text+0x38ac): undefined reference to _gfortran_st_write_done' dlexlib.f:(.text+0x38fd): undefined reference to _gfortran_st_write'
dlexlib.f:(.text+0x3914): undefined reference to _gfortran_transfer_character' dlexlib.f:(.text+0x3921): undefined reference to _gfortran_st_write_done'
dlexlib.f:(.text+0x3972): undefined reference to _gfortran_st_write' dlexlib.f:(.text+0x3989): undefined reference to _gfortran_transfer_character'
dlexlib.f:(.text+0x3996): undefined reference to _gfortran_st_write_done' dlexlib.f:(.text+0x39e7): undefined reference to _gfortran_runtime_error'
dlexlib.f:(.text+0x3a07): undefined reference to _gfortran_os_error' dlexlib.f:(.text+0x3a42): undefined reference to _gfortran_concat_string'
../vasp.5.lib/libdmy.a(dlexlib.o): In function indexn_': dlexlib.f:(.text+0x3c67): undefined reference to _gfortran_string_index'
../vasp.5.lib/libdmy.a(dlexlib.o): In function noccur_': dlexlib.f:(.text+0x3d46): undefined reference to _gfortran_string_index'
../vasp.5.lib/libdmy.a(dlexlib.o): In function parse_': dlexlib.f:(.text+0x3e92): undefined reference to _gfortran_string_index'
../vasp.5.lib/libdmy.a(dlexlib.o): In function strip_': dlexlib.f:(.text+0x4457): undefined reference to _gfortran_runtime_error'
dlexlib.f:(.text+0x447c): undefined reference to _gfortran_os_error' dlexlib.f:(.text+0x44a6): undefined reference to _gfortran_concat_string'
dlexlib.f:(.text+0x4644): undefined reference to _gfortran_compare_string' dlexlib.f:(.text+0x468c): undefined reference to _gfortran_runtime_error'
dlexlib.f:(.text+0x46b1): undefined reference to _gfortran_os_error' dlexlib.f:(.text+0x46d6): undefined reference to _gfortran_concat_string'
../vasp.5.lib/libdmy.a(dlexlib.o): In function subwrd_': dlexlib.f:(.text+0x49f7): undefined reference to _gfortran_st_write'
dlexlib.f:(.text+0x4a09): undefined reference to _gfortran_transfer_character' dlexlib.f:(.text+0x4a11): undefined reference to _gfortran_st_write_done'
dlexlib.f:(.text+0x4a4b): undefined reference to _gfortran_st_write' dlexlib.f:(.text+0x4a5d): undefined reference to _gfortran_transfer_character'
dlexlib.f:(.text+0x4a65): undefined reference to _gfortran_st_write_done' dlexlib.f:(.text+0x4a9f): undefined reference to _gfortran_st_write'
dlexlib.f:(.text+0x4ab1): undefined reference to _gfortran_transfer_character' dlexlib.f:(.text+0x4ad0): undefined reference to _gfortran_transfer_integer'
dlexlib.f:(.text+0x4ae2): undefined reference to _gfortran_transfer_character' dlexlib.f:(.text+0x4afa): undefined reference to _gfortran_transfer_integer'
dlexlib.f:(.text+0x4b0c): undefined reference to _gfortran_transfer_character' dlexlib.f:(.text+0x4b14): undefined reference to _gfortran_st_write_done'
dlexlib.f:(.text+0x4b4e): undefined reference to _gfortran_st_write' dlexlib.f:(.text+0x4b60): undefined reference to _gfortran_transfer_character'
dlexlib.f:(.text+0x4b68): undefined reference to _gfortran_st_write_done' dlexlib.f:(.text+0x4ba2): undefined reference to _gfortran_st_write'
dlexlib.f:(.text+0x4bb4): undefined reference to _gfortran_transfer_character' dlexlib.f:(.text+0x4bbc): undefined reference to _gfortran_st_write_done'
../vasp.5.lib/libdmy.a(dlexlib.o): In function nitems_': dlexlib.f:(.text+0x4f53): undefined reference to _gfortran_concat_string'
dlexlib.f:(.text+0x4f7b): undefined reference to _gfortran_concat_string' dlexlib.f:(.text+0x501a): undefined reference to _gfortran_st_read'
dlexlib.f:(.text+0x5031): undefined reference to _gfortran_transfer_integer' dlexlib.f:(.text+0x503b): undefined reference to _gfortran_st_read_done'
dlexlib.f:(.text+0x51c1): undefined reference to _gfortran_runtime_error' dlexlib.f:(.text+0x51e1): undefined reference to _gfortran_os_error'
dlexlib.f:(.text+0x5213): undefined reference to _gfortran_concat_string' dlexlib.f:(.text+0x5241): undefined reference to _gfortran_runtime_error'
dlexlib.f:(.text+0x5261): undefined reference to _gfortran_os_error' dlexlib.f:(.text+0x529d): undefined reference to _gfortran_concat_string'
dlexlib.f:(.text+0x53a0): undefined reference to _gfortran_st_write' dlexlib.f:(.text+0x53b2): undefined reference to _gfortran_transfer_character'
dlexlib.f:(.text+0x53ba): undefined reference to _gfortran_st_write_done' dlexlib.f:(.text+0x53fd): undefined reference to _gfortran_st_write'
dlexlib.f:(.text+0x540f): undefined reference to _gfortran_transfer_character' dlexlib.f:(.text+0x5417): undefined reference to _gfortran_st_write_done'
dlexlib.f:(.text+0x54e0): undefined reference to _gfortran_runtime_error' dlexlib.f:(.text+0x5500): undefined reference to _gfortran_os_error'
dlexlib.f:(.text+0x5532): undefined reference to _gfortran_concat_string' dlexlib.f:(.text+0x5560): undefined reference to _gfortran_runtime_error'
dlexlib.f:(.text+0x5580): undefined reference to _gfortran_os_error' dlexlib.f:(.text+0x55bc): undefined reference to _gfortran_concat_string'
dlexlib.f:(.text+0x56a4): undefined reference to _gfortran_st_write' dlexlib.f:(.text+0x56b6): undefined reference to _gfortran_transfer_character'
dlexlib.f:(.text+0x56be): undefined reference to _gfortran_st_write_done' dlexlib.f:(.text+0x5701): undefined reference to _gfortran_st_write'
dlexlib.f:(.text+0x5713): undefined reference to _gfortran_transfer_character' dlexlib.f:(.text+0x571b): undefined reference to _gfortran_st_write_done'
../vasp.5.lib/libdmy.a(drdatab.o): In function rdatab_': drdatab.f:(.text+0x1b8): undefined reference to _gfortran_st_open'
drdatab.f:(.text+0x1f8): undefined reference to _gfortran_st_rewind' drdatab.f:(.text+0x244): undefined reference to _gfortran_st_close'
drdatab.f:(.text+0x36c): undefined reference to _gfortran_st_read' drdatab.f:(.text+0x381): undefined reference to _gfortran_transfer_character'
drdatab.f:(.text+0x389): undefined reference to _gfortran_st_read_done' drdatab.f:(.text+0x3d8): undefined reference to _gfortran_runtime_error'
drdatab.f:(.text+0x3f8): undefined reference to _gfortran_os_error' drdatab.f:(.text+0x436): undefined reference to _gfortran_concat_string'
drdatab.f:(.text+0x663): undefined reference to _gfortran_compare_string' drdatab.f:(.text+0x836): undefined reference to _gfortran_compare_string'
drdatab.f:(.text+0xa52): undefined reference to _gfortran_string_index' drdatab.f:(.text+0xa98): undefined reference to _gfortran_compare_string'
drdatab.f:(.text+0xbce): undefined reference to _gfortran_concat_string' drdatab.f:(.text+0xc40): undefined reference to _gfortran_concat_string'
drdatab.f:(.text+0xcad): undefined reference to _gfortran_concat_string' drdatab.f:(.text+0xea5): undefined reference to _gfortran_st_read'
drdatab.f:(.text+0xed0): undefined reference to _gfortran_transfer_integer' drdatab.f:(.text+0xee4): undefined reference to _gfortran_st_read_done'
drdatab.f:(.text+0xf56): undefined reference to _gfortran_st_read' drdatab.f:(.text+0xf81): undefined reference to _gfortran_transfer_real'
drdatab.f:(.text+0xf95): undefined reference to _gfortran_st_read_done' drdatab.f:(.text+0x1007): undefined reference to _gfortran_st_read'
drdatab.f:(.text+0x1036): undefined reference to _gfortran_transfer_complex' drdatab.f:(.text+0x104a): undefined reference to _gfortran_st_read_done'
drdatab.f:(.text+0x10bc): undefined reference to _gfortran_st_read' drdatab.f:(.text+0x10e7): undefined reference to _gfortran_transfer_logical'
drdatab.f:(.text+0x10fb): undefined reference to _gfortran_st_read_done' drdatab.f:(.text+0x116a): undefined reference to _gfortran_st_close'
make: *** [vasp] Error 1
Last edited by pro_junjie on Sun Dec 30, 2012 10:30 am, edited 1 time in total.

pro_junjie

VASP 5.3.3 compilation error

#3 Post by pro_junjie » Sun Dec 30, 2012 3:34 pm

Former error disappeared after using MKL, Now, I get following error:

mpif90 -o vasp main.o base.o mpi.o smart_allocate.o xml.o constant.o jacobi.o main_mpi.o scala.o asa.o lattice.o poscar.o ini.o mgrid.o xclib.o vdw_nl.o xclib_grad.o radial.o pseudo.o gridq.o ebs.o mkpoints.o wave.o wave_mpi.o wave_high.o spinsym.o symmetry.o symlib.o lattlib.o random.o nonl.o nonlr.o nonl_high.o dfast.o choleski2.o mix.o hamil.o xcgrad.o xcspin.o potex1.o potex2.o constrmag.o cl_shift.o relativistic.o LDApU.o paw_base.o metagga.o egrad.o pawsym.o pawfock.o pawlhf.o rhfatm.o hyperfine.o paw.o mkpoints_full.o charge.o Lebedev-Laikov.o stockholder.o dipol.o pot.o dos.o elf.o tet.o tetweight.o hamil_rot.o chain.o dyna.o k-proj.o sphpro.o us.o core_rel.o aedens.o wavpre.o wavpre_noio.o broyden.o dynbr.o hamil_high.o rmm-diis.o reader.o writer.o tutor.o xml_writer.o brent.o stufak.o fileio.o opergrid.o stepver.o chgloc.o fast_aug.o fock_multipole.o fock.o mkpoints_change.o sym_grad.o mymath.o internals.o npt_dynamics.o dynconstr.o dimer_heyden.o dvvtrajectory.o vdwforcefield.o nmr.o pead.o subrot.o subrot_scf.o force.o pwlhf.o gw_model.o optreal.o steep.o davidson.o david_inner.o electron.o rot.o electron_all.o shm.o pardens.o paircorrection.o optics.o constr_cell_relax.o stm.o finite_diff.o elpol.o hamil_lr.o rmm-diis_lr.o subrot_cluster.o subrot_lr.o lr_helper.o hamil_lrf.o elinear_response.o ilinear_response.o linear_optics.o setlocalpp.o wannier.o electron_OEP.o electron_lhf.o twoelectron4o.o mlwf.o ratpol.o screened_2e.o wave_cacher.o chi_base.o wpot.o local_field.o ump2.o ump2kpar.o fcidump.o ump2no.o bse_te.o bse.o acfdt.o chi.o sydmat.o dmft.o rmm-diis_mlr.o linear_response_NMR.o wannier_interpol.o linear_response.o fftmpiw.o fftmpi_map.o fftw3d.o fft3dlib.o /home-gk/users/nscc295_ZQF/vasp53wjj/fftw/3.3.3/lib/libfftw3.a -L../vasp.5.lib -ldmy ../vasp.5.lib/linpack_double.o /home-gk/compiler/intel/composerxe/mkl/lib/intel64/libmkl_intel_lp64.a -Wl,--start-group /home-gk/compiler/intel/composerxe/mkl/lib/intel64/libmkl_intel_lp64.a /home-gk/compiler/intel/composerxe/mkl/lib/intel64/libmkl_intel_thread.a /home-gk/compiler/intel/composerxe/mkl/lib/intel64/libmkl_core.a -Wl,--end-group -lguide
ld: cannot find -lguide
make: *** [vasp] Error 1
Last edited by pro_junjie on Sun Dec 30, 2012 3:34 pm, edited 1 time in total.

pro_junjie

VASP 5.3.3 compilation error

#4 Post by pro_junjie » Thu Jan 03, 2013 11:46 am

solved by change -lguide to -liomp5
Last edited by pro_junjie on Thu Jan 03, 2013 11:46 am, edited 1 time in total.

tezsevin
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Posts: 1
Joined: Fri Dec 28, 2012 1:50 pm
License Nr.: 5-1426
Location: Turkey

VASP 5.3.3 compilation error

#5 Post by tezsevin » Thu Jan 03, 2013 1:40 pm

Our research group is using national computing system of Turkey and due to authorization issues they are conducting installation for us. They said that they installed the code successfully however we are getting following error:

WARNING: random wavefunctions but no delay for mixing, default for NELMDL
entering main loop
N E dE d eps ncg rms rms(c)
--------------------------------------------------------------------------
mpirun noticed that process rank 0 with PID 36357 on node lufer98.yonetim exited on signal 11 (Segmentation fault).
--------------------------------------------------------------------------



please help,

regards
Last edited by tezsevin on Thu Jan 03, 2013 1:40 pm, edited 1 time in total.

wangna
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Joined: Fri Jan 11, 2013 5:53 am

VASP 5.3.3 compilation error

#6 Post by wangna » Fri Jan 11, 2013 5:59 am

Solved by change -lguide to -liomp5 。



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Last edited by wangna on Fri Jan 11, 2013 5:59 am, edited 1 time in total.

TopolM
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Posts: 6
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License Nr.: 5-1179

VASP 5.3.3 compilation error

#7 Post by TopolM » Fri Jan 11, 2013 11:37 am

Hi, pro_junjie!
Which version of Intel MKL do you use?
Last edited by TopolM on Fri Jan 11, 2013 11:37 am, edited 1 time in total.

GeO

VASP 5.3.3 compilation error

#8 Post by GeO » Thu Jan 17, 2013 6:15 pm

Hi, pro_junjie,

may I ask how the problem in the first post was solved? I have the same issue when compiling VASP 5.3.3.
Last edited by GeO on Thu Jan 17, 2013 6:15 pm, edited 1 time in total.

buchi25

VASP 5.3.3 compilation error

#9 Post by buchi25 » Mon Feb 11, 2013 10:24 am

Dear all,

I encountered the same problem when I was compiling VASP5.3.3.

My system is
OS: Ubuntu12.04 64bit
CPU: Intel Xeon E5-2687W (2CPU 16COREs in totall)
Memory: 64GB

I use MKL and both FFTW 3.3.3 and Openmpi 1.6.3 are installed.

I could solve the problem by changing -lguide to -liomp5 as pro_junjie mentioned.
Im my case, I used ifort 12.1.5.
I don't know why but ifort 13.0.1 didn't compile vasp5.3.3 properly.

Thanks.




<span class='smallblacktext'>[ Edited Thu Feb 14 2013, 02:44AM ]</span>
Last edited by buchi25 on Mon Feb 11, 2013 10:24 am, edited 1 time in total.

mimou7525
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VASP 5.3.3 compilation error

#10 Post by mimou7525 » Thu Mar 07, 2013 1:39 pm

[quote="pro_junjie"]solved by change -lguide to -liomp5[/quote
dear pro_junjie.
do you help me
how to change -lguide to liomp5, in which files
thank you
Last edited by mimou7525 on Thu Mar 07, 2013 1:39 pm, edited 1 time in total.

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